Prepare files for upload to the MaizeGDB Genome Browser

Enter one or more sequences in FASTA format. After entering the sequence(s) and providing your name and e-mail address, click "Submit". Once your sequences are submitted, you will receive a confirmation e-mail with a link to monitor the status of your job. Once all your sequences have been BLASTed, you will receive another e-mail with a link to a region in the MaizeGDB Genome Browser, where your aligned sequences will appear as a separate track. You will be able to change the view on the genome browser and visualize other genomic regions as well. If you are satisfied with the way the track appears, you may submit your data for consideration for permanent upload into the MaizeGDB Genome Browser.

Data Sets To Choose From

Programs
blastn - Compares a nucleotide sequence to the nucleotide sequences in our database.
tblastn - Compares a protein sequence against the translated nucleotide sequences in our database.

Job name (optional) Program Database blastn tblastn B73_RefGen_v2 B73_RefGen_v2_Super_Masked

High Similarity Low Similarity Custom

E-value Percent-Identity Word-Size Match-Mismatch-Scores Gap-Costs 0.0001 0.001 0.01 0.1 1 .10 .20 .30 .40 .50 .60 .70 .80 .90 .99 7 11 15 16 20 24 28 32 48 64 128 256 1,-2 1,-3 1,-4 2,-3 4,-5 1,-1 5,2 2,2 1,2 0,2 3,1 2,1 1,1

Sequence (raw or FASTA format):  (see an example) OR Upload File(s) Loading... Uploader Information E-mail Address*: Submitter Name*: Principal Investigator: Description of Data characters remaining * Indicates a required field

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